PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01348
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 225aa    MW: 25547.1 Da    PI: 6.6815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01348genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
         EMT01348  70 RGNFSEEEERLIITLHAGLGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.52E-5636IPR009057Homeodomain-like
PROSITE profilePS500905.6221061IPR017877Myb-like domain
SMARTSM00717151466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-81671IPR009057Homeodomain-like
SuperFamilySSF466891.99E-1657123IPR009057Homeodomain-like
PROSITE profilePS5129425.77965119IPR017930Myb domain
SMARTSM007175.9E-1569117IPR001005SANT/Myb domain
PfamPF002491.3E-1470114IPR001005SANT/Myb domain
CDDcd001671.34E-1072115No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2472119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKTLVEHI QKRGGNVGSR RGPPHTGRVY RRGEDRPLRW  60
TNSPRSDIKR GNFSEEEERL IITLHAGLGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPDQTNHD TERERQYAAF ARFEARRRGR HEGGIVVLED SDDDDDAPPP  180
PVRHGDVGEG SSRGGRTIKK EKADDSEEDD GDVGDWARLI EFFAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-211311925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.21e-73PREDICTED: transcription factor MYB39
SwissprotQ8GWP05e-47MYB39_ARATH; Transcription factor MYB39
TrEMBLR7VZI61e-166R7VZI6_AEGTA; Transcription factor MYB39
STRINGBGIOSGA014443-PA3e-72(Oryza sativa Indica Group)
STRINGLOC_Os04g50680.13e-72(Oryza sativa Japonica Group)
STRINGSi012660m3e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-53myb domain protein 9